So I go to the doctors on Friday and he tells me that I have tonsillitis. My right ear feels clogged and I can barely hear out of it. Two days later after medication, the right ear is worse and now the left ear is clogged and I can't hear anything. Everything is muffled and I feel like I am going deaf!!! Anyone have any home remedies or any advice to offer me???

Are you on antibiotics? You should be if you have tonnsilitis.
Your full ears are probably part of the sickness. Drink plently of fluids to flush the toxins from your system, and in time you should feel back to normal.