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How does that account for my sinuses being full of green puss, and my lungs crackling and me spitting out stringy green mucos?
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Over the last 5 years researchers have identified a connection between GERD (and a more serious form of acid reflux called Laryngopharyngeal Reflux) and both asthma and chronic sinusitis. The upper and lower respiratory systems (sinuses and lungs) are very closely linked and acid reflux can create irritation in the lungs and lower respiratory system that radiates up into the sinuses. Your body's natural response to the irritation is inflammation and the creation of additional mucus to try and protect those irritated tissues, but the inflammation can keep the mucus from draining correctly, causing it to become discolored, and leading to asthma flare ups, wheezing and sinus infections.
There are three keys to getting the kinds of symptoms you mention under control:
1. Figure out what's causing your initial reactions and get those things under control - for most people it's either allergies or acid reflux that causes the initial inflammation so you probably need to be taking a daily antihistamine and something to control acid reflux.
2. Reduce the inflammation that the triggers have caused so that the tissues in your lungs and sinuses can start to function normally again. Usually this requires antibiotics (which it sounds like you've tried) and possibly a short course of oral steroids.
3. Have an ongoing management plan to keep those tissues healthy and functioning correctly. Usually this includes ongoing anti-inflammatory sprays for the lungs and sinuses, saline nasal irrigation to keep mucus from building up in the sinuses, and ongoing treatment of the allergies and acid reflux.
Unfortunately there's no real silver bullet for this stuff, it requires a lot of trial and error and really good medical support because the causes are complicated and often take multiple adjustments to medication to get them under control.