Not sure how severe the obstructive apnea has to be (from snoring etc), but apparently the action of stopping breathing, then suddenly gasping for air, can cause the valve to open at inappropriate times, letting acid flow into the esophagus. If they found you had apnea, even if it was mild, and you also have acid reflux and migraines, I don't think I would have been satisfied with a doctor's solution of just sleeping on my side.
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